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Wednesday, October 8, 14:00 – 16:00 |
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| Plenary Session |
Olympia 2 |
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| Chair |
K. S. Nikita ( National Technical University of Athens /GR) |
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| PL. 1 |
14:00-14:40 |
Science and Technology: Genes, Brain, Stress and Evolution |
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G. Chrousos; Athens University Medical School/GR |
| PL. 2 |
14:40-15.20 |
Biomedical Engineering for Global Healthcare |
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M. Akay; Arizona State University/USA |
| PL. 3 |
15:20-16.00 |
The European Cancer Informatics Landscape: Challenges for the Biomedical Informatics Community |
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M. Tsiknakis; Institute of Computer Science FORTH/GR |
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Wednesday, October 8, 16:20 – 17:50 |
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| Session BI-8.1 |
Olympia 1 |
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Sequence Search and Alignment |
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| Chairs |
R. Henson (The Mathworks Inc/USA), A. Stafylopatis ( National Technical University of Athens /GR) |
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| BI-8.1.1 |
16:20-16:35 |
A Novel Method for Protein 3D-Structure Similarity Measure Based on N-Gram Modeling |
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J. Razmara 1 , S. B. Deris2; 1Tarbiat Moallem University of Azarbaijan/IR, 2 Universiti Technologi Malaysia /MY |
| BI-8.1.2 |
16:35-16:50 |
Sequence Clustering with the Self-Organizing Hidden Markov Model Map |
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C. Ferles , A. Stafylopatis; National Technical University of Athens /GR |
| BI-8.1.3 |
16:50-17:05 |
Design and Implementation of the Smith-Waterman Algorithm on the CUDA-compatible GPU |
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Y. Munekawa , F. Ino, K. Hagihara; Osaka University/JP |
| BI-8.1.4 |
17:05-17:20 |
High Performance FPGA-based Core for BLAST Sequence Alignment with the Two-Hit Method |
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S. Kasap , K. Benkrid, Y. Liu; University of Edinburgh/UK |
| BI-8.1.5 |
17:20-17:35 |
Optimizing Performance, Cost, and Sensitivity in Pairwise Sequence Search on a Cluster of PlayStations |
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A. M. Aji , W. Feng; Virginia Tech/USA |
| BI-8.1.6 |
17:35-17:50 |
An Improved Non-Comparative Classification Method for Human microRNA Gene Prediction |
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R. Batuwita , V. Palade; University of Oxford/UK |
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Wednesday, October 8, 16:20 – 17:50 |
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| Session BI-9.1 |
Templar's |
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Systems Biology |
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| Chairs |
I. Rigoutsos (IBM Thomas J. Watson Research Centre/USA), L. Alexopoulos ( National Technical University of Athens /GR) |
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| BI-9.1.1 |
16:20-16:35 |
Adaptive Aggregation Method for the Chemical Master Equation |
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J. Zhang , L. Watson, Y. Cao; Virginia Polytechnic Institute and State University/USA |
| BI-9.1.2 |
16:35-16:50 |
Parameter Identification for a DNA Replication Model |
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K. Koutroumpas 1 , Z. Lygerou 2 , J. Lygeros1; 1ETH Zurich/CH, 2 University of Patras/GR |
| BI-9.1.3 |
16:50-17:05 |
A Framework for the Integrated Analysis of Metabolic and Regulatory Networks |
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R. Mendes , A. Louren ç o, S. Carneiro, E. C. Ferreira, I. Rocha, M. Rocha; University of Minho/PT |
| BI-9.1.4 |
17:05-17:20 |
Stability and Oscillation of Genetic Regulatory Networks with Time Delays |
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F. X. Wu; University of Saskatchewan/CA |
| BI-9.1.5 |
17:20-17:35 |
Structure Learning for Biomolecular Pathways Containing Cycles |
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S. Itani 1 , K. Sachs 2 , G. Nolen 2 , N. Dahle h1; 1MIT/USA, 2 Stanford University/USA |
| BI-9.1.6 |
17:35-17:50 |
Building in-silico Pathway SBML Models from Heterogeneous Sources |
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I. Kanaris 1 , K. Moutselos 1 , A. Chatziioannou 2 , I. Maglogiannis 1 , F. Kolisis2; 1University of Aegean/GR, 2 National Hellenic Research Foundation/GR |
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Wednesday, October 8, 16:20 – 17:35 |
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| Session BE-2.1 |
Abbey |
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Biological Systems and Models |
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| Chairs |
M. Bloom (New York University/USA), C. Provatidis ( National Technical University of Athens /GR) |
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| BE-2.1.1 |
16:20-16:35 |
Translating Multiscale Cancer Models into Clinical Trials: Simulating Breast Cancer Tumor Dynamics within the Framework of the “Trial of Principle” Clinical Trial and the ACGT project. |
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E. Kolokotroni 1 , G. Stamatakos 1 , D. Dionysiou 1 , E. Georgiadi 1 , C. Desmedt 2 , N. Graf3; 1National Technical University of Athens/GR, 2 Institut Jules Bordet/BE, 3 University Hospital of Saarland/DE |
| BE-2.1.2 |
16:35-16:50 |
Multilevel Cancer Modeling in the Clinical Environment: Simulating the Behavior of Wilms Tumor in the Context of the SIOP 2001/GPOH Clinical Trial and the ACGT Project |
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E. Georgiadi 1 , G. Stamatakos 1 , N. Graf 2 , E. Kolokotroni 1 , D. Dionysiou 1 , A. Hoppe 2 , N. Uzunoglu1; 1National Technical University of Athens/GR, 2 University Hospital of the Saarland/DE |
| BE-2.1.3 |
16:50-17:05 |
Robust Parameter Identification for Biological Circuit Calibration |
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E. Sciacca , G. Nicosia; University of Catania/IT |
| BE-2.1.4 |
17:05-17:20 |
Towards an Inclusive Computational Model of Visual Cortex |
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M. Gheiratmand 1 , H. Soltanian-Zadeh 2,3 , H. Khaloozadeh 1; 1 K. N. Toosi University of Technology/IR, 2 University of Tehran/IR, 3 Henry Ford Health System/USA |
| BE-2.1.5 |
17:20-17:35 |
Modeling and Simulation of Electrical Impedance Tomography (EIT) on Ventilated Patients with ARDS Lungs |
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M. Denai 1 , M. Mahfouf 1 , G. H. Mills 2; 1 University of Sheffield/UK, 2 Royal Hallamshire Hospital/UK |
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Wednesday, October 8, 17:50 – 19:05 |
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| Session BE-5.1 |
Olympia 1 |
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Biomedical Image Processing & Analysis |
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| Chairs |
E. Kostaridou (University of Patras/GR), S. Golemati (University of Athens/GR) |
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| BE-5.1.1 |
17:50-18:05 |
Using Agents for Feature Extraction: Content Based Image Retrieval for Medical Applications |
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A. D Theodosi, G. A. Tsihrintzis ; University of Piraeus/GR |
| BE-5.1.2 |
18:05-18:20 |
On the Use of Block Matching for the Estimation of Arterial Wall Motion |
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S. Golemati , J. Stoitsis, K. S. Nikita; National Technical University of Athens /GR |
| BE-5.1.3 |
18:20-18:35 |
Mass Detectability in Dedicated Breast CT : A Simulation Study with the Application of Volume Noise Removal |
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J. Xia , J. Lo; Duke University/USA |
| BE-5.1.4 |
18:35-18:50 |
Susceptibility of Texture Measures to Noise: An Application to Lung Tumor CT Images |
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O. A. Kadi , D. Watson; University of Sussex/UK |
| BE-5.1.5 |
18:50-19:05 |
Using Spiral Intensity Profile to Quantify Head and Neck Cancer |
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K. Kong 1 , Y. Sharma 1 , S. H. Raza 1 , Z. Chen 2 , S. Muller 2 , M. Wang1; 1Georgia Institute of Technology/USA , 2 Emory University/USA |
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Wednesday, October 8, 17:50 – 19:05 |
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| Session BI-9.2 |
Templar's |
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Systems Biology |
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| Chairs |
P. D. Cristea ( University "Politehnica" of Bucharest/RO), J. Lygeros (ETH Zurich/CH) |
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| BI-9.2.1 |
17:50-18:05 |
A Hybrid Computational Model for Phagocyte Transmigration |
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J. Xue , J. Gao, L. Tang; University of Texas at Arlington/USA |
| BI-9.2.2 |
18:05-18:20 |
Modeling Pro-death Signaling Pathways in Cancer Hepatocytes Using Multi-combinatorial Treatments of Inhibitors and Stimuli |
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L. Alexopoulos 1 , D. Lauffenburger 2 , P. Sorger3; 1National Technical University of Athens/GR , 2 MIT/USA, 3 Harvard Medical School/USA |
| BI-9.2.3 |
18:20-18:35 |
Evaluating Evolutionary Multiobjective Algorithms for the in silico Optimization of Mutant Strains |
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P. Maia, I. Rocha, E.C. Ferreira, M. Rocha ; University of Minho/PT |
| BI-9.2.4 |
18:35-18:50 |
Systems Analysis of Bone Mechanotransduction at Cellular Level |
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K. Mynampati 1 , P. L. Vee Sin2; 1National University of Singapore/SG , 2 University of Melbourne/AU |
| BI-9.2.5 |
18:50-19:05 |
The Benefit of Cooperation: Identifying Growth-efficient Interacting Strains of Escherichia Coli Using Metabolic Flux Balance Models |
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E. Tzamali 1 ,2 , M. Reczko 3; 1 University of Crete/GR, 2 Foundation for Research and Technology Hellas/GR, 3 Synaptic Ltd/GR |
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Wednesday, October 8, 17:50 – 19:20 |
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| Session BE-7.1 |
Abbey |
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Neuro-Engineering |
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| Chairs |
P. Ktonas ( University of Houston/USA ), C. Siettos ( National Technical University of Athens /GR) |
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| BE-7.1.1 |
17:50-18:05 |
Automatic Intra-Operative Localization of STN using the Beta Band Frequencies of Microelectrode Recordings |
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K. P. Michmizos 1 , G. L. Tagaris 2 , D. E. Sakas 3 , K. S. Nikita1; 1 National Technical University of Athens/GR, 2 “G. Gennimatas” General Hospital of Athens/GR, 3 University of Athens, “Evangelismos” Hospital/GR |
| BE-7.1.2 |
18:05-18:20 |
Slow and Fast EEG Sleep Spindle Component Extraction Using Independent Component Analysis |
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E. Ventouras 1 , P. Ktonas 2 , H. Tsekou 2 , T. Paparrigopoulos2 , I. Kalatzis 1 , C. Soldatos 2; 1Technological Educational Institute of Athens/GR, 2 University of Athens/GR, |
| BE-7.1.3 |
18:20-18:35 |
Comparison of Fractal Dimension Estimation Algorithms for Epileptic Seizure Onset Detection |
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G. E. Polychronaki 1, P. Ktonas 2 , S. Gatzonis 4 , P. A. Asvestas 3 , E. Spanou 1 , A. Siatouni 4 , H. Tsekou 4 , D. Sakas 4 , K. S. Nikita1; 1National Technical University of Athens/GR, 2 “Prof. Petros Kokkalis” Greek Center for Neurosurgical Research/GR, 3 Technological Educational Institute of Athens/GR, 4 University of Athens, “Evangelismos” Hospital/GR |
| BE-7.1.4 |
18:35-18:50 |
Towards Emotion Aware Computing: a Study of Arousal Modulation with Multichannel Event Related Potentials, Delta Oscillatory Activity and Skin Conductivity Responses |
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C. Frantzidis 1 , C. Lithari 1 , A. Vivas 2 , C. Papadelis 3 , C. Pappas 1 , P. Bamidis1; 1Aristotle University of Thessaloniki/GR , 2 City Liberal Studies/GR, 3 RIKEN/JP |
| BE-7.1.5 |
18:50-19:05 |
A Neural Network Model of Peri-Hand Space Representation and its Plastic Properties Related to Tool Use |
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E. Magosso , M. Zavaglia, A. Serino, G. di Pellegrino, M. Ursino; University of Bologna/IT |
| BE-7.1.6 |
19:05-19:20 |
Fitting Local Field Potentials Generating Model of the Basal Ganglia to Actual Recorded Signals |
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G. Tsirogiannis 1 , G. Tagaris 2 , D. Sakas 3 , K. Nikita1; 1National Technical University of Athens/GR, 2 "G. Gennimatas" General Hospital of Athens/GR, 3 University of Athens, "Evangelismos" Hospital/GR |
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Thursday, October 9, 08:00 – 09:20 |
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| Plenary Session |
Olympia 2 |
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| Chair |
D. I. Fotiadis (University of Ioannina/GR) |
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| PL. 4 |
08:00-08:40 |
Model-Based Strategies for Biomedical Image Analysis |
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J. S. Duncan; Yale University/USA |
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Recent Research Activities in Europe : Supporting the Evolution of Healthcare |
| PL. 5 |
08:40-09:20 |
L. Gatzoulis; European Commission |
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Thursday, October 9, 09:20 – 10:50 |
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| Session BI-3.1 |
Olympia 1 |
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Functional Genomics, Proteomics |
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| Chairs |
F. Kolisis (National Hellenic Research Foundation/GR), J. Gao ( University of Texas at Arlington/USA) |
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| BI-3.1.1 |
09:20-09:35 |
VIP: Visualization of Integrated Proteomics Data |
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E. Giannopoulou 1 , G. Lepouras 1 , E. Manolakos2; 1University of Peloponnese/GR, 2 University of Athens/GR |
| BI-3.1.2 |
09:35-09:50 |
Proteomic Based Identification of Cancer Biomarkers: The LOCCANDIA Integrated Platform |
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M. Kalaitzakis 1 , V. Kritsotakis 1 , P. Grangeat 2 , C. Paulus 2 , L. Gerfault 2 , M . Perez 3 , C. Reina 3 , G. Potamias 1 , M. Tsiknakis 1 , D. Kafetzopoulos 1 , P. Binz4; 1FORTH/GR, 2 CEA-LETI/FR, 3 ATOS Origin/ES, 4 Geneva Bioinformatics (GeneBio) SA/CH |
| BI-3.1.3 |
09:50-10:05 |
Evaluation of Two-Dimensional Gel Electrophoresis Maps by Local Tangent Space Alignment: an Application to Neuroproteomics |
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S. Mazzara 1 , A. Conti 2 , S. Olivieri 2 , S. Iannaccone 2 , M. Alessio 2 , S. Cerutti 1 , L. Pattini 1 ; 1 Politecnico di Milano/IT, 2 San Raffaele Scientific Institute/IT |
| BI-3.1.4 |
10:05-10:20 |
Inserts in Prokaryote Genomes |
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P. D. Cristea 1 , R. A. Tuduce 1 , J. Cornelis2; 1University "Politehnica" of Bucharest/RO, 2 Vrije Universiteit Brussel/BE |
| BI-3.1.5 |
10:20-10:35 |
A Binary Format for Genetic Data Designed for Large Whole Genome Studies that Enables both Marker and Strand Based Analyses |
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A. Antoniades, L. Loizou, A. Aristodimou, C. Pattichis ; University of Cyprus/CY |
| BI-3.1.6 |
10:35-10:50 |
Model-based Prediction of Cis-acting RNA Elements Regulating Tissue-specifc Alternative Splicing |
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X. Wang 1 , K. Wang 2 , G. Wang 1 , J. Sanford 1 , Y. Liu1; 1Indiana University/USA, 2 Harbin Engineering University/CN |
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Thursday, October 9, 09:20 – 10:50 |
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|
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| Session BE-4.1 |
Templar's |
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Biomedical Data Engineering |
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| Chairs |
P. Sebastiani ( Boston University , USA ), I. Maglogiannis (University of Central Greece/GR) |
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| BE-4.1.1 |
09:20-09:35 |
Flexible Data Integration and Ontology-based Data Access to Medical Records |
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L. Zamboulis , A. Poulovassilis, G. Roussos; Birkbeck College , University of London/UK |
| BE-4.1.2 |
09:35-09:50 |
Novel Metrics of Functional Network Structure and Their Application to the Detection and Characterisation of Alzheimer's Disease |
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A. Anastasiou , E. Ifeachor; University of Plymouth/UK |
| BE-4.1.3 |
09:50-10:05 |
HRV Complexity as a Diagnostic Tool for Late Onset Sepsis in Sick Premature Infants |
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Y. Wang 1,4 , L. Senhadji 1,4 , G. Carrault 1,4 , H. Shu 2,4 , A. Beuchee3,4; 1Université de Rennes 1/FR, 2 Southeast University/CN, 3 Centres Hospitaliers Universitaires/FR, 4 Centre de Recherche en Information Biomédicale sino-français/FR |
| BE-4.1.4 |
10:05-10:20 |
Structuring the e-SCP-ECG + Protocol for Multi Vital-sign Handling |
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G. Mandellos, M. Koukias, D. Lymberopoulos ; University of Patras/GR |
| BE-4.1.5 |
10:20-10:35 |
Point of Care Monitoring and Diagnostics for Autoimmune Diseases |
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F. G. Kalatzis 1 , T. P. Exarchos 1 , N. Giannakeas 1 , S. Markoula 1 , E. Hatzi 2 , P. Rizos 1 , I. Georgiou 1 , D. I. Fotiadis 1 ; University of Ioannina/GR, University Hospital of Ioannina/GR |
| BE-4.1.6 |
10:35-10:50 |
Monitoring of Patients Suffering from Special Phobias Exploiting Context and Profile Information |
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T. Panagiotakopoulos 1 , D. Lymberopoulos 1 , G. Manolessos 2 ; 1 University of Patras/GR, 2 Mental Health Center of Patras/GR |
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Thursday, October 9, 09:20 – 10:50 |
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|
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| Session BE-2.2 |
Abbey |
|
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Biological Systems and Models |
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| Chairs |
S. Tsangaris ( National Technical University of Athens /GR), N. Maglaveras ( Aristotle University of Thessaloniki /GR) |
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|
| BE-2.2.1 |
09:20-09:35 |
Changes in Bone Components of Newborn Rats after Maternal Treatment with Cytarabine |
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Z. Drzazga 1 , K. Michalik 1 , M. Kaszuba 2 , H. Trzeciak 3 ; 1 University of Silesia/PL, 2 Institute of Stomatology/PL, 3 Medical University of Silesia /PL |
| BE-2.2.2 |
09:35-09:50 |
Laser Induced Autofluorescence of Bones and Teeth in Newborn Rats after Maternal Administration of Indinavir |
| |
Z. Drzazga 1 , A. Blaszta 1 , M. Kaszuba 2 , B. Nowinska 3 , K. Michalik1; 1University of Silesia/PL, 2 Institute of Stomatology/PL, 3 Medical University of Silesia /PL |
| BE-2.2.3 |
09:50-10:05 |
The Influence of Different Bone Remodeling Equations on a 2-D Vertebra Model in the Final Bone Density Distribution |
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C. Vossou , G. Savva, C. Provatidis; National Technical University of Athens /GR |
| BE-2.2.4 |
10:05-10:20 |
The Influence of Infection Control Policies: A Systematic Study of the Dynamics of an Individual-based Epidemic Model with Isolation |
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A. Reppas, A. Tsoumanis, C. Siettos ; National Technical University of Athens /GR |
| BE-2.2.5 |
10:20-10:35 |
Dead-time Compensation in Intravenous Anesthesia Control |
| |
J. Mendez 1 , S. Torres 1 , J. Reboso 2 , H. Reboso1; 1University of La Laguna/ES, 2 Hospital Universitario de Canarias/ES |
| BE-2.2.6 |
10:35-10:50 |
Numerical Simulation of Coronary Blood Flow in Idealized Composite Arterial Coronary Grafts |
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A. Politis 1 , G. Stavropoulos 2 , N. Vlachos 3 , N. Markatos1; 1National Technical University of Athens/GR, 2 Hippokration Hospital/GR, 3 University of Thessaly/GR |
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|
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|
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Thursday, October 9, 10:50 – 11:30 |
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|
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| Poster Session |
Olympia 2 |
|
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Bioengineering |
| |
|
| BE-P.1 |
10:50-11:30 |
A Parallel Robot for Ankle Rehabilitation-Evaluation and its Design Specifications |
| |
C. Syrseloudis , I. Emiris; National Kapodistrian University of Athens /GR |
| BE-P.2 |
10:50-11:30 |
Continuous Recording of the Oscillometric Mean Arterial Pressure by the Differential Servo System with Two Photoplethysmographic Sensors |
| |
R. Raamat , K. Jagomagi, J. Talts; University of Tartu/EE |
| BE-P.3 |
10:50-11:30 |
Oxygen Consumption by Vascular Wall in Skeletal Muscle Arterioles under Physiological Conditions |
| |
M. Shibata 1 , T. Yamakoshi 2 , K. I. Yamakoshi2; 1Shibaura Institute of Technology/JP , 2 Kanazawa University/JP |
| BE-P.4 |
10:50-11:30 |
Development of Urine Glucose Level Monitor for Home Healthcare Using Near Infrared Spectroscopy |
| |
S. Tanaka , M. Ogawa, T. Gu, K. i. Yamakoshi; Kanazawa University/JP |
| BE-P.5 |
10:50-11:30 |
Fractal Analysis of Medical Images in the Irregular Regions of Interest |
| |
E. Oczeretko 1 , M. Borowska 1 , A. Kitlas 1 , A. Borusiewicz 2 , M. S. Siemieniuk3; 1University of Bialystok/PL, 2 Academy of Agrobusiness/PL, 3 Medical University of Bialystok /PL |
| BE-P.6 |
10:50-11:30 |
Characterization of Chromatin Texture by Contour Complexity for Cancer Cell Classification |
| |
T. Kiyuna 1 , A. Saito 1 , E. Kerr 2 , W. Bickmore2; 1NEC Corporation/JP, 2 Western General Hospital/UK |
| BE-P.7 |
10:50-11:30 |
Effects of Digital Dewaxing Methods on K-means-clusterized IR Images Collected on Formalin-fixed Paraffin-embedded Samples of Skin Carcinoma |
| |
D. Sebiskveradze , C. Gobinet, E. Ly, O. Piot, V. Vrabie, M. Manfait, P. Jeannesson, M. Herbin; Universite de Reims/FR |
| BE-P.8 |
10:50-11:30 |
Size-adapted Segmentation of Individual Mammographic Microcalcifications |
| |
N. Arikidis 1 , A. Karahaliou 1 , S. Skiadopoulos 1 , P. Korfiatis 1 , E. Likaki 2 , G. Panayiotakis 1 , L. Costaridou1; 1University of Patras/GR, 2 University Hospital of Patras/GR |
| BE-P.9 |
10:50-11:30 |
Retrieval and Ranking of Biomedical Images Using Boosted Haar Features |
| |
C. Reddy , F. Bhuyan; Wayne State University/USA |
| BE-P.10 |
10:50-11:30 |
Multimodality Image Registration using Ordinary Procrustes Analysis and Entropy of Bivariate Normal Kernel Density |
| |
W. H. Cho 1 , S. W. Kim 1 , M. E. Lee 1 , S. H. Kim 2 , S. Y. Park 2 , C. Jeong3; 1Chonnam National University/KR, 2 Mokpo National University/KR, 3 Honam University/KR |
| BE-P.11 |
10:50-11:30 |
Wavelet Entropy Differentiations of Event Related Potentials in Dyslexia |
| |
G. A. Giannakakis 1 , N. N. Tsiaparas 1 , M. F. S. Xenikou 1 , C. Papageorgiou 2 , K. S. Nikita1; 1National Technical University of Athens/GR, 2 University of Athens, Eginition Hospital/GR |
| BE-P.12 |
10:50-11:30 |
Stability Analysis of Epileptic EEG Signals |
| |
G. Hocepied , A. Kacha, F. Grenez, A. Nonclercq; University of Brussels /BE |
| BE-P.13 |
10:50-11:30 |
Control of Medical Robotics and Neurorobotic Prosthetics by Non-invasive Brain-robot Interfaces via EEG and RFID Technology |
| |
E. Antoniadou; Univeristy Of Central Greece/GR |
| BE-P.14 |
10:50-11:30 |
Graph Theory Based Algorithm for Magnetic Resonance Brain Images Segmentation |
| |
J. Wang, D. Liu , L. Dou, B. Zhang, J. Kong, Y. Lu; Northeast Normal University/CN |
| BE-P.15 |
10:50-11:30 |
Monte Carlo Modeling of Corneal and Retinal Optical Coherence Tomography Imaging |
| |
A. Gerakis 1 , M. Kirillin 2 , E. Sergeeva 2 , M. Makropoulou 1 , A. Serafetinides1; 1National Technical University of Athens /GR, 2 Russian Academy of Science/RU |
| BE-P.16 |
10:50-11:30 |
Investigating Mesh Parameters to Achieve Clinically Applicable Finite Element Analysis of Vertebrae |
| |
C. Vossou , C. Provatidis; National Technical University of Athens /GR |
| BE-P.17 |
10:50-11:30 |
Image Analysis and CADx System for Mucosal Lesions |
| |
A. Chodorowski 1 , C. R. Choudhury 2 , T. Gustavsson1; 1Chalmers University of Technology/SE, 2 AB Shetty Memorial Institute of Dental Sciences/IN |
| BE-P.18 |
10:50-11:30 |
Gait Analysis and Automatic Gait Event Identifucation Using Accelerometers |
| |
G. Zdragkas , J. Avaritsiotis; National Technical University of Athens /GR |
| BE-P.19 |
10:50-11:30 |
Versatile Approximation of the Lung Field Boundaries in Chest Radiographs in the Presence of Bacterial Pulmonary Infections |
| |
D. Iakovidis; Technological Educational Institute of Lamia/GR |
| BE-P.20 |
10:50-11:30 |
Assessment of Osteoarthritis Severity by Wavelet Analysis of the Hip Joint Space Radial Distance Signature |
| |
I. Boniatis, E. Panagiotopoulos, D. Lymberopoulos, G. Panayiotakis ; University of Patras/GR |
| BE-P.21 |
10:50-11:30 |
Chromosome Region Recognition Based on Local Band Patterns |
| |
T. Abe , C. Hamada, T. Kinoshita; Tohoku University/JP |
| BE-P.22 |
10:50-11:30 |
A Robust Pose Matching Algorithm for Covered Body Analysis for Sleep Apnea |
| |
C. W. Wang , A. Hunter; University of Lincoln/UK |
| BE-P.23 |
10:50-11:30 |
Ontology-Inferred Phylogeny Reconstruction for Analyzing the Evolutionary Relationships between Species: Ontological Inference versus Cladistics |
| |
A. Shaban-Nejad , V. Haarslev; Concordia University/CA |
| BE-5.4.6 |
10:50-11:30 |
A Simple Sequential Pose Recognition Model for Sleep Apnea
C.W. Wang, A. Hunter; University of Lincoln/UK |
| |
|
| |
|
| |
Thursday, October 9, 11:30 – 13:00 |
| |
|
|
| Session BE-5.2 |
Olympia 1 |
|
| |
Biomedical Image Processing & Analysis |
| |
|
| Chairs |
N. Paragios (Ecole Centrale de Paris/FR), G. Panayiotakis (University of Patras/GR) |
| |
|
| BE-5.2.1 |
11:30-11:45 |
Segmentation of Sublingual Veins from Near Infrared Sublingual Images |
| |
Z. Yan , K. Wang, N. Li; Harbin Institute of Technology/CN |
| BE-5.2.2 |
11:45-12:00 |
Joining Retinal Vessel Segments |
| |
B. A. Diri 1 , A. Hunter 1 , D. Steel 2 , M. Habib2; 1The University of Lincoln / UK , 2 Sunderland Eye Infirmary/UK |
| BE-5.2.3 |
12:00-12:15 |
Segmentation of Nuclei in Cancer Tissue Images: Contrasting Active Contours with Morphology-Based Approach |
| |
S. D. Cataldo 1 , E. Ficarra 1 , A. Acquaviva 2 , E. Macii1; 1Politecnico di Torino/IT, 2 University of Verona/IT |
| BE-5.2.4 |
12:15-12:30 |
Local Based Fuzzy Clustering for Segmentation of MR Brain Images |
| |
Y. Lv 1 , L. Dou 1 , N. Che 2 , J. Kong 1 , B. Zhang 1 , J. Wang 1 , D. Liu; 1 Northeast Normal University/CN, 2 Ji Lin University/CN, |
| BE-5.2.5 |
12:30-12:45 |
Automatic DNA Microarray Gridding based on Support Vector Machines |
| |
D. Bariamis, D. Maroulis , D. K. Iakovidis; University of Athens/GR |
| BE-5.2.6 |
12:45-13:00 |
Improving Renal Cell Carcinoma Classification by Automatic Region of Interest Selection |
| |
Q. Chaudry 1 , S. H. Raza 1 , Y. Sharma 1 , A. Young 2 , M. Wang1; 1Georgia Institute of Technology/USA , 2 Emory University/USA |
| |
|
| |
|
| |
Thursday, October 9, 11:30 – 13:00 |
| |
|
| Session BI-7.1 |
Templar's |
|
| |
Query Languages, Interoperability, Bio-Ontology and Data Mining |
| |
|
| Chairs |
A. Zhang ( State University of New York / USA ), M. Tsiknakis (FORTH/GR) |
| |
|
| BI-7.1.1 |
11:30-11:45 |
A Medical, Description Logic based, Ontology for Skin Lesion Images |
| |
M. Maragoudakis 1 , I. Maglogiannis 2 , D. Lymberopoulos3; 1University of the Aegean/GR, 2 University of Central Greece/GR, 3 University of Patras/GR |
| BI-7.1.2 |
11:45-12:00 |
A Framework for the Development of Biomedical Text Mining Software Tools |
| |
A. Lourenço 1 , R. Carreira 1 , S. Carneiro 1 , P. Maia 1 , D. Glez-Peña 2 , F. Fdez-Riverola 2 , E. C. Ferreira 1 , I. Rocha 1 , M. Rocha1; 1University of Minho/PT, 2 University of Vigo/ES |
| BI-7.1.3 |
12:00-12:15 |
Message Communication Server for Medical Information Systems' Interoperability |
| |
L. Kolovou , D. Lymberopoulos; University of Patras/GR |
| BI-7.1.4 |
12:15-12:30 |
A High Throughput Approach to Keep Alive a Web-Based Database System for Multiple Search Among Published Bioinformatics Tools and Databases |
| |
V. Atlamazoglou 1 , T. Thireou 1 , A. Alexandridou 2 , G. Spyrou2; 1National Technical University of Athens /GR, 2 Biomedical Research Foundation of the Academy of Athens/GR |
| BI-7.1.5 |
12:30-12:45 |
Parallel Integration of Heterogeneous Genome-Wide Data Sources |
| |
D. Greene , K. Bryan, P. Cunningham; University College Dublin/IE |
| BI-7.1.6 |
12:45-13:00 |
Polyadenylation Site Prediction Using Interesting Emerging Patterns |
| |
G. Tzanis , I. Kavakiotis, I. Vlahavas; Aristotle University of Thessaloniki/GR |
| |
|
| |
|
| |
Thursday, October 9, 11:30 – 13:00 |
| |
|
|
| Session BI-5.1 |
Abbey |
|
| |
Genes and their Regulation |
| |
|
| Chairs |
M. Reczko (FORTH/GR), S. Kossida (Biomedical Research Foundation of the Academy of Athens/GR ) |
| |
|
| BI-5.1.1 |
11:30-11:45 |
GOmir: a Stand-alone Application for Human microRNA Target Analysis and Gene Ontology Clustering |
| |
P. Zotos 1 , G. Papachristoudis 2 , M. G. Roubelakis 1 , I. Michalopoulos 1 , S. Kossida 1 , N. P. Anagnou 1 , K. I. Pappa1,3; 1Biomedical Research Foundation of the Academy of Athens/GR, 2 Massachusetts Institute of Technology/USA, 3 University of Athens/GR |
| BI-5.1.2 |
11:45-12:00 |
miRNA Target Prediction through Mining of miRNA Relationships |
| |
Y. Zhang, S. de Bruin, F. J. Verbeek; Leiden University/NL |
| BI-5.1.3 |
12:00-12:15 |
Modeling Gene Regulation and Spatial Organization of Sequence Based Motifs |
| |
J. Supper 1 , C. aufm Kampe 1 , D. Wanke 1 , K. W. Berendzen 1 , K. Harter 1 , R. Bonneau 2 , A. Zell1; 1University of Tübingen/DE, 2 New York University/USA |
| BI-5.1.4 |
12:15-12:30 |
Mature miRNA Identification via the Use of a Naive Bayes Classifier |
| |
K. Gkirtzou 1,2 , P. Tsakalides 1,2 , P. Poirazi2; 1University of Crete/GR, 2 Foundation of Research and Technology Hellas/GR |
| BI-5.1.5 |
12:30-12:45 |
Large-Scale Approximate Intervention Strategies for Probabilistic Boolean Networks as Models of Gene Regulation |
| |
M. Tan 1, R. Alhajj 1 , F. Polat2; 1University of Calgary/CA, 2 Middle East Technical University/TR |
| BI-5.1.6 |
12:45-13:00 |
Motifs in Regulatory Networks and their Structural Robustness |
| |
A. Elena, H. B. Amor, N. Glade, J. Demongeot ; University J. Fourier/FR |
| |
|
| |
|
| |
Thursday, October 9, 14:00 – 15:00 |
| |
|
|
| Plenary Session |
Olympia 2 |
|
| |
|
| Chair |
N. Bourbakis (Wright State University/USA) |
| |
|
| PL. 6 |
14:00-14:40 |
Frontiers of Neuroengineering with Focus on Brain Machine Interface and Neural Prostheses |
| |
N. Thakor; The Johns Hopkins School of Medicine |
| |
14:40-15:00 |
Awards |
| |
|
| |
|
| |
Thursday, October 9, 15:00 – 16:30 |
| |
|
|
| Session BE-5.3 |
Olympia 1 |
|
| |
Biomedical Image Processing & Analysis |
| |
|
| Chairs |
C. Pattichis (University of Cyprus/CY), J. Stoitsis (National Technical University of Athens/GR) |
| |
|
| BE-5.3.1 |
15:00-15:15 |
Matrix Factorization Techniques for Analysis of Imaging Mass Spectrometry Data |
| |
P. Siy , R. Moffitt, R. M. Parry, Y. Chen, Y. Liu, M. C. Sullards, A. H. Merrill, M. D. Wang; Georgia Tech/USA |
| BE-5.3.2 |
15:15-15:30 |
A Machine Learning Based System for Multichannel Fluorescence Analysis in Pancreatic Tissue Bioimages |
| |
J. Herold 1 , S. Abouna 2 , L. Zhou 2 , S. Pelengaris 2 , D. Epstein 2 , M. Khan 2 , T. Nattkemper 1; 1University of Bielefeld/DE, 2 University of Warwick/UK |
| BE-5.3.3 |
15:30-15:45 |
A Multiple Expert-based Melanoma Recognition System for Dermoscopic Images of Pigmented Skin Lesions |
| |
M. M. Rahman , P. Bhattacharya, B. C. Desai; Concordia University/CA |
| BE-5.3.4 |
15:45-16:00 |
Lungs SPECT Image Processing for Volume and Perfusion Index Estimation |
| |
M. Lyra 1 , M. Gavrilelli 2 , V. Lyra 3 , G. Kokona 1 , G. Limouris 1 , K. Skouroliakou4; 1University of Athens/GR, 2 Medical Imaging Center/GR, 3 Attikon University Hospital/GR, 4 Technical Institute of Athens/GR, |
| BE-5.3.5 |
16:00-16:15 |
Ultrasound Imaging Media Layer Texture Analysis of the Carotid Artery |
| |
C. Loizou 1 , M. Pantziaris 2 , A. Nicolaides 3 , A. Spanias 4 , M. Pattichis 5 , C. Pattichis 6; 1Intercollege/CY, 2 Cyprus Institute of Neurology and Genetics/CY, 3 Vascular Screening and Diagnostic Center/CY, 4 Arizona State University/USA, 5 University of New Mexico/USA, 6 University of Cyprus/CY |
| BE-5.3.6 |
16:15-16:30 |
The Study of Hepatic NF-κB Transcription Dynamics via Fluorescent Image Analysis |
| |
A. McArdle, K. McMenemy, S. Ferguson; Queen's University Belfast/UK |
| |
|
| |
|
| |
Thursday, October 9, 15:00 – 16:30 |
| |
|
|
| Session BI-1.1 |
Templar's |
|
| |
Algorithms, Modeling and Simulation of Bio-Sets |
| |
|
| Chairs |
G. Spyrou (Biomedical Research Foundation of the Academy of Athens/GR ), P. Tsakalides (FORTH/GR) |
| |
|
| BI-1.1.1 |
15:00-15:15 |
A Branch-and-Bound Approach for Knowledge-based Protein Structure Assembly |
| |
G. Zheng 1 , G. Narasimhan2; 1North Carolina Central University/USA, 2 Florida International University/USA |
| BI-1.1.2 |
15:15-15:30 |
GPM: A Graph Pattern Matching Kernel with Diffusion for Chemical Compound Classification |
| |
A. Smalter, J. Huan, G. Lushington; University of Kansas/USA |
| BI-1.1.3 |
15:30-15:45 |
Structure Feature Selection for Chemical Compound Classification |
| |
H. Fei, J. Huan; University of Kansas/USA |
| BI-1.1.4 |
15:45-16:00 |
An Enhanced Markov Clustering Method for Detecting Protein Complexes |
| |
C. Moschopoulos 1 , G. Pavlopoulos 2 , S. Likothanassis 1 , S. Kossida3l; 1University of Patras/GR, 2 European Molecular Biology Laboratory/DE, 3 Biomedical Research Foundation of the Academy of Athens/GR |
| BI-1.1.5 |
16:00-16:15 |
Physical Understanding via Reduction of Complex Multiscale Models: Glycolysis in Saccharomyces cerevisiae |
| |
P. Kourdis 1 , D. Goussis 1 , R. Steuer2; 1National Technical University of Athens/GR , 2 Institute for Biology/DE |
| BI-1.1.6 |
16:15-16:30 |
Validating Models of Bacterial Chemotaxis by Simulating the Random Motility Coefficient |
| |
Z. Wang, M. Kim, G. Rosen ; Drexel University/USA |
| |
|
| |
|
| |
Thursday, October 9, 15:00 – 16:30 |
| |
|
|
| Session BE-3.1 |
Abbey |
|
| |
Biomedical & Biological Sensors |
| |
|
| Chairs |
T. Tamura ( Chiba University/JP), I. Karanasiou ( National Technical University of Athens ) |
| |
|
| BE-3.1.1 |
15:00-15:15 |
Comparative Study of Empirical Mode Decomposition Applied in Experimental Biosignals |
| |
A. Karagiannis , P. Constantinou; National Technical University of Athens /GR |
| BE-3.1.2 |
15:15-15:30 |
On the Use of Ultrasonic Communications in Biosensor Networks |
| |
A. Ifantis, A. Kalis ; Athens Information Technology/GR |
| BE-3.1.3 |
15:30-15:45 |
Passive Focused Monitoring and Non-invasive Irradiation of Head Tissue Phantoms at Microwave Frequencies |
| |
K. Karathanasis, I. Gouzouasis, I. Karanasiou , G. Stratakos, N. Uzunoglu; National Technical University of Athens /GR |
| BE-3.1.4 |
15:45-16:00 |
Efficient Implementation of Biomedical Hardware Using Open Source Descriptions and Behavioral Synthesis |
| |
G. Economakos; National Technical University of Athens /GR |
| BE-3.1.5 |
16:00-16:15 |
A Formal Language Approach for Multi-Sensor Wearable Health-Monitoring Systems |
| |
A. Pantelopoulos, N. Bourbakis ; Wright State University, AIIS Inc./ USA |
| BE-3.1.6 |
16:15-16:30 |
A Study to Demonstrate the Use of an Air Bag Device to Prevent Fall-related Injuries |
| |
T. Tamura 1 , T. Yoshimura 2 , M. Sekine1; 1Chiba University/JP, 2 Tokyo Metropolitan College of Industrial Technology/JP |
| |
|
| |
|
| |
Thursday, October 9, 16:50 – 18:20 |
| |
|
|
| Session BE-4.2 |
Olympia 1 |
|
| |
Biomedical Data Engineering |
| |
|
| Chairs |
S. Mougiakakou ( National Technical University of Athens /GR), D. Maroulis (University of Athens/GR) |
| |
|
| BE-4.2.1 |
16:50-17:05 |
Assessment of the Risk of Coronary Heart Event Based on Data Mining |
| |
M. Karaolis 1 , J. Moutiris 2 , C. Pattichis1; 1University of Cyprus/CY, 2 Paphos General Hospital/CY |
| BE-4.2.2 |
17:05-17:20 |
Feature Selection and Classification for Assessment of Chronic Stroke Impairment |
| |
J. Y. Jung , J. I. Glasgow, S. H. Scott; Queen's University/CA |
| BE-4.2.3 |
17:20-17:35 |
Medical Disease Prediction Using Artificial Neural Networks |
| |
D. Mantzaris 1 , G. Anastassopoulos 1 , D. Lymberopoulos2; 1Democritus University of Thrace/GR, 2 University of Patras/GR |
| BE-4.2.4 |
17:35-17:50 |
Pathological Voice Discrimination using Cepstral Analysis, Vector Quantization and Hidden Markov Models |
| |
S. Costa 1 , B. G. Aguiar. Neto 2 , J. M. Fechine2; 1Federal Center of Technological Education of Paraíba/BR,2 Federal University of Campina Grande /BR |
| BE-4.2.5 |
17:50-18:05 |
Classification of Event-Related Potentials Associated with Response Errors in Actors |
| |
P. Asvestas 1 , E. Ventouras 1 , I. Karanasiou 2 , G. Matsopoulos2; 1Technological Educational Institute of Athens/GR, 2 National Technical University of Athens/GR |
| BE-4.2.6 |
18:05-18:20 |
Intelligent Patient Profiling for Diagnosis, Staging and Treatment Selection in Colon Cancer |
| |
Y. Goletsis , T. P. Exarchos, N. Giannakeas, D. I. Fotiadis; University of Ioannina/GR |
| |
|
| |
|
| |
Thursday, October 9, 16:50 – 18:20 |
| |
|
|
| Session BI-4.1 |
Templar's |
|
| |
Gene Expression Analysis |
| |
|
| Chairs |
R. Brause ( Johann Wolfgang Goethe-Universität/DE ), F. Kalatzis (University of Ioannina/GR) |
| |
|
| BI-4.1.1 |
16:50-17:05 |
Signature Genes in Human Heart Failure Based on Gene Expression Analysis: Can we Identify a Unique Set? |
| |
H. Wang, H. Zheng ; University of Ulster/UK |
| BI-4.1.2 |
17:05-17:20 |
Normalized EM Algorithm for Tumor Clustering using Gene Expression Data |
| |
P. Nguyen , V. Nguyen; University of New South Wales/AU |
| BI-4.1.3 |
17:20-17:35 |
Time Series Gene Expression Data Clustering and Pattern Extraction in Arabidopsis Thaliana Phosphatase-encoding Genes |
| |
P. S. Bidari 1 , R. Manshaei 1 , J. Alirezaie 1 , M. A. Malboobi2; 1K. N. Toosi University of Technology/IR, 2 National Institute for Genetic Engineering and Biotechnology/IR |
| BI-4.1.4 |
17:35-17:50 |
A Novel Evolutionary Algorithm for Bi-clustering of Gene Expression Data Based on the Order Preserving Sub-Matrix (OPSM) Constraint |
| |
H. Roh , S. Park; Yonsei University/KR |
| BI-4.1.5 |
17:50-18:05 |
An Information Theoretic Framework for Genomic Data Analysis |
| |
A. McKenna 1 , G. Alterovitz 2 - 1 Boston University/USA, 2 MIT/USA |
| BI-4.1.6 |
18:05-18:20 |
GOMA: Web Utility for Direct Finding of Enriched Gene Ontology Terms from Gene Expression Profile |
| |
E. Mizutani, J. Sese ; Ochanomizu University/JP |
| |
|
| |
|
| |
Thursday, October 9, 16:50 – 18:20 |
| |
|
|
| Session BI-6.1 |
Abbey |
|
| |
Protein Structure Prediction and Molecular Simulation |
| |
|
| Chairs |
A. Elofsson (Stockcholm University/SE), G. Spyrou (Biomedical Research Foundation of the Academy of Athens/GR ) |
| |
|
| BI-6.1.1 |
16:50-17:05 |
Extracting Decision Rules in Predicting of Protein Secondary Structure |
| |
N. M. Nguyen 1 , J. Zurada 2 , J. Rajapakse1; 1Nanyang Technological University/SG, 2 University of Louisville/USA |
| BI-6.1.2 |
17:05-17:20 |
Distance-based Indexing of Residue Contacts for Protein Structure Retrieval and Alignment |
| |
A. Sacan 1 , I. H. Toroslu 2 , H. Ferhatosmanoglu1; 1The Ohio State University/USA, 2 Middle East Technical University/TR |
| BI-6.1.3 |
17:20-17:35 |
Pruning Neural Networks for Protein Secondary Structure Prediction |
| |
S. Babaei 1 , A. Seyyedsalehi 1 , A. Geranmayeh2; 1Amirkabir University of Technology/IR, 2 Darmstadt University of Technology/DE |
| BI-6.1.4 |
17:35-17:50 |
Investigation Into the Role of Sequence-Driven-Features for Prediction of Protein Structural Classes |
| |
S. Nanuwa , H.Seker; De Montfort University/ UK |
| BI-6.1.5 |
17:50-18:05 |
Protein Similarity Networks and Genetic Algorithm Driven Feature Selection for Fold Recognition |
| |
I. K. Valavanis 1, G. M. Spyrou 2 , K. S. Nikita1; 1National Technical University of Athens /GR, 2 Biomedical Research Foundation of Academy of Athens/GR |
| BI-6.1.6 |
18:05-18:20 |
A Local Structural Alignment Algorithm with Variable Length Alignment Fragment Pairs |
| |
V. Kundeti , S. Rajasekaran; University of Connecticut/USA |
| |
|
| |
|
| |
Friday, October 10, 08:00 – 09:20 |
| |
|
|
| Plenary Session |
Olympia 2 |
|
| |
|
| Chair |
L. M. Roa ( University of Seville/ES ) |
| |
|
| PL. 7 |
08:00-08:40 |
Quo Vadis Cardiovascular Informatics? |
| |
I. Kakadiaris;University of Houston/USA |
| PL. 8 |
08:40-09:20 |
On Ellipsoidal Tumours |
| |
G. Dassios; University of Cambridge/UK |
| |
|
| |
|
| |
Friday, October 10, 09:20 – 10:50 |
| |
|
|
| Session BE-5.4 |
Olympia 1 |
|
| |
Biomedical Image Processing & Analysis |
| |
|
| Chairs |
K. Cleary (Georgetown University/USA), S. Pavlopoulos ( National Technical University of Athens /GR) |
| |
|
| BE-5.4.1 |
09:20-09:35 |
Medical Image Authentication and Self-Correction through an Adaptive Reversible Watermarking Technique |
| |
V. E. Fotopoulos , M. L. Stavrinou, A. N. Skodras; Hellenic Open University/GR |
| BE-5.4.2 |
09:35-09:50 |
Determination of the Mechanoelastic Properties of Parasites via Analysis of their Microscopic Images |
| |
D. Arabadjis 1 , P. Rousopoulos v1 , C. Papaodysseus 1 , M. Panagopoulos 1 , P. Loumou 1 , G. Theodoropoulos2; 1National Technical University of Athens /GR, 2 Agricultural University of Athens/GR |
| BE-5.4.3 |
09:50-10:05 |
Automatic Frame Reduction of Wireless Capsule Endoscopy Video |
| |
S. Tsevas 1 , D. Iakovidis 2 , D. Maroulis 2 , E. Pavlakis3; 1Automatic Frame Reduction of Wireless Capsule Endoscopy Video/GR, 2 University of Athens/GR, 3 Aretaieion Hospital/GR |
| BE-5.4.4 |
10:05-10:20 |
A Methodology for Detecting Blood-based Abnormalities in Wireless Capsule Endoscopy Videos |
| |
A. Karargyris, N. Bourbakis ; Wright State University/USA |
| BE-5.4.5 |
10:20-10:35 |
Medical Needle Steering for Lung Biopsy: Experimental Results in Tissue Phantoms Using a Robotic Needle Driver |
| |
J. Ding 1 , D. Stoianovici 2, D. Petrisor 2 , P. Mozer 2 , R. Avila 3 , L. Ibanez 3 , W. Turner 3 , D. Yankelvitz 4 , E. Wilson 1 , F. Banovac 1 , K. Cleary1; 1Georgetown University/USA, 2 Johns Hopkins Medical Institutions/USA, 3 Kitware Inc./USA, 4 Weill-Cornell Medical Center/USA |
| BE-5.4.6 |
10:35-10:50 |
A Simple Sequential Pose Recognition Model for Sleep Apnea |
| |
C. W. Wang, A. Hunter; University of Lincoln/UK |
| |
|
| |
|
| |
Friday, October 10, 09:20 – 10:50 |
| |
|
|
| Session BI-1.2 |
Templar's |
|
| |
Algorithms, Modeling and Simulation of Bio-Sets |
| |
|
| Chairs |
E. Bongcam-Rudloff (Linnaeus Ceenter of Bioinformatics/SE), J. Demongeot (University J. Fourier/FR) |
| |
|
| BI-1.2.1 |
09:20-09:35 |
Clinical Trial Simulation in Grid Environments |
| |
D. Kyriazis, A. Menychtas, D. Dionysiou, G. Stamatakos, T. Varvarigou; National Technical University of Athens /GR |
| BI-1.2.2 |
09:35-09:50 |
Fast Parallel Bio-Molecular Logic Computing Algorithms of Discrete Logarithm |
| |
Y. Y. Shih 1 , M. S .H. Ho2 1National Taipei College of Business/TW, 2 Ming Chuan University/TW |
| BI-1.2.3 |
09:50-10:05 |
A Web Based Tool for Integration of Molecular Pathway Models |
| |
E. Sciacca 1 ,S. V. A. Ayyadurai 2 , F. C. Dewey2; 1University of Catania/IT, 2 MIT/USA |
| BI-1.2.4 |
10:05-10:20 |
Faster Greedy Algorithms for Multiple Degenerate Primer Selection |
| |
S. Balla 1 , S. Rajasekeran 2 , I. Mandoiu2; 1Memorial Sloan-Kettering Cancer Center/USA, 2 University of Connecticut/USA |
| BI-1.2.5 |
10:20-10:35 |
Clock-constrained Tree Proposal Operators in Bayesian Phylogenetic Inference |
| |
S. Hoehna , M. Defoin-Platel, A. J. Drummond; University of Auckland/NZ |
| BI-1.2.6 |
10:35-10:50 |
Genetic Algorithm Based Feature Selection for Mass Spectrometry Data |
| |
Y. Li , Y. Liu, L. Bai; Shandong Institute fo Light Industry/CN |
| |
|
| |
|
| |
Friday, October 10, 09:20 – 10:35 |
| |
|
|
| Session BI-2.1 |
Abbey |
|
| |
Bio-Imaging |
| |
|
| Chairs |
G. Kontaxakis (Universidad Politécnica de Madrid /ES), K. Marias (FORTH/GR) |
| |
|
| BI-2.1.1 |
09:20-09:35 |
Automatic Quality Assessment for Fluorescence Microscopy Images |
| |
P. Paul 1 , D. Kalamatianos 1 , H. Duessmann 2 , H. Huber2; 1National University of Ireland/IE, 2 Royal College of Surgeon Ireland/IE |
| BI-2.1.2 |
09:35-09:50 |
A New Method for Processing the Forward Solver Data in Fluorescence Molecular Imaging |
| |
D. Gorpas , K. Politopoulos, D. Yova; National Technical University of Athens /GR |
| BI-2.1.3 |
09:50-10:05 |
Modeling of Regional Dynamic CO2 Reactivity in Respiratory Related Brain Areas Using BOLD fMRI |
| |
G. D. Mitsis1, A. K. Harvey2, S. Dirckx2, S. D. Mayhew2, R. Rogers2, I. Tracey2, R. G. Wise3, K. T. S. Pattinnson2; 1National Technical University of Athens/GR, 2University of Oxford/UK, 3Cardiff University/UK |
| BI-2.1.4 |
10:05-10:20 |
Identification of Significant Metabolic Markers from MRSI Data for Brain Cancer Classification |
| |
M. Kounelakis 1, M. Zervakis 1, M. Blazadonakis 1, G. Postma 2, L. Buydens2, A. Heerschap 3, X. Kotsiakis 4; 1 Technical University of Crete/GR, 2 Radboud University/NL, 3 University Medical Center Nijmegen/NL, 4General Hospital of Chania/GR |
| BI-2.1.5 |
10:20-10:35 |
A Study of the Parameters Affecting Minimum Detectable Activity Concentration Level of Clinical LSO PET Scanners |
| |
N. A. Karakatsanis, K. S. Nikita; National Technical University of Athens/GR |
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Friday, October 10, 10:50 – 11:30 |
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| Poster Session |
Olympia 2 |
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Bioinformatics |
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| BI-P.1 |
10:50-11:30 |
An Information Theoretic Divergence for Microarray Data Clustering |
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X. V. Nguyen , N. M. Phuong; The University of New South Wales/AU |
| BI-P.2 |
10:50-11:30 |
Using ANOVA to Analyse Thalidomide's Molecular Mechanisms in Human PBMC Microarrays |
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R. Paiva , B. Dias, M. R. Alves, U. Lopes, F. Nobre; Federal University of Rio de Janeiro/BR |
| BI-P.3 |
10:50-11:30 |
Signaling Biomarker Pattern Discovery Using Reverse Phase Protein Microarray |
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Y. B. Kim, J. Gao, J. V. Pastor, K. Rosenblatt; University of Texas/USA |
| BI-P.4 |
10:50-11:30 |
cDNA Microarray Analysis of a Glucocorticoid Treated Acute Lymphoblastic Leukemia Cell Line |
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E. Sifakis 1 , G. Lambrou 2 , A. Prentza 1 , D. Koutsouris 1 , F. Tzortzatou-Stathopoulou2; 1National Technical University of Athens/GR , 2 University of Athens/GR |
| BI-P.5 |
10:50-11:30 |
Development of a Universal, Flexible and Freely Available Database Management System for Gene-Centered Data Collection, Curation and Display of DNA Variation |
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S. Zaimidou 1 , S. van Baal 1 , T. D. Smith2 , K. Mitropoulos 3 , M. Ljulic 4 , D. Radojkovic 4 , R. G. Cotton 2 , G. P. Patrinos1 1Erasmus University Medical Center/NL, 2 The University of Melbourne/AU, 3 Asclepion Genetics/CH, 4 Institute of Molecular Genetics and Genetic Engineering/RS |
| BI-P.6 |
10:50-11:30 |
Use of Gene Ontology Semantic Information in Protein Interaction Data Visualization |
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R. Massanet , P. Caminal, A. Perera; Universitat Politècnica de Catalunya/ES |
| BI-P.7 |
10:50-11:30 |
Benefits of Using Paired Controls for Analyzing Gene Expression of Prostate Cancer |
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S. Haney , M. Kam, L. Hrebien; Drexel University/USA |
| BI-P.8 |
10:50-11:30 |
A Computer Simulation Model of Gene Replacement in Vector Populations |
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M. Guevara, E. E. Vallejo ; ITESM Campus Estado de Mexico/MX |
| BI-P.9 |
10:50-11:30 |
Complementary Grouping of Amino Acids based on base-pairing |
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M. Park , B. G. Kim; University of Massachusetts/USA |
| BI-P.10 |
10:50-11:30 |
Phylogenetic Reconstruction with Disk-Covering and Bayesian Approaches |
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Y. Guo, J. Tang ; University of South Carolina/USA |
| BI-P.11 |
10:50-11:30 |
Identification of Active Biological Networks and Common Expression Conditions |
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M. Seki, J. Sese ; Ochanomizu University/JP |
| BI-P.12 |
10:50-11:30 |
Novel Weighted Amino Acid Composition for Prediction of Protein Structural Classes within the Context of Multi-sensor Data Fusion Approach |
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H. Seker; De Montfort University/UK |
| BI-P.13 |
10:50-11:30 |
Fast Parallel Bio-Molecular Logic Computing Algorithms: Protein Folding |
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Y. Y. Shih 1 , M. S. H. Ho2; 1 National Taipei College of Business/TW, 2 Ming Chuan University/TW |
| BI-P.14 |
10:50-11:30 |
Detection of Transcription Factor Binding Sites Using Rényi Entropy |
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J. Maynou 1 , M. Vallverdú 1 , F. Clarià 2 , A. Perera 1 , P. Caminal1; 1Technical University of Catalonia/ES, 2 University of Lleida/ES |
| BI-P.15 |
10:50-11:30 |
BioSumm: a Novel Summarizer Oriented to Biological Information |
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E. Baralis, A. Fiori , L. Montrucchio; Politecnico di Torino/IT |
| BI-P.16 |
10:50-11:30 |
Maximum Likelihood Reconstruction for Fluorescence Optical Projection Tomography |
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A. Darrell 1 , H. Meyer 1 , U. Birk 1 , K. Marias 1 , M. Brady 2 , J. Ripoll1; 1Foundation for Research and Technology Hellas/GR, 2 University of Oxford/UK |
| BI-P.17 |
10:50-11:30 |
Classification of Laser Induced Fluorescence Spectra from Normal and Malignant Tissues using Learning Vector Quantization Neural Network in Bladder Cancer Diagnosis |
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K. Gopal 1,2 , M. K. Komal 3 , K.S. Chowdhary 3 , P. Ajeethkumar 3 , V. K. Unnikrishnan 3 , P. Vijendra 3 , C. Arun 3 , N. Mads 1 , C. Santhosh3; 1University of Copenhagen/DK, 2 Nordic Bioscience A/S/DK, 3 Manipal University/IN |
| BI-6.1.6 |
10:50-11:30 |
A Local Structural Alignment Algorithm with Variable Length Alignment Fragment Pairs |
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V. Kundeti , S. Rajasekaran; University of Connecticut/USA |
| BI-1.2.3 * |
10:50-11:30 |
A Web Based Tool for Integration of Molecular Pathway Models |
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E. Sciacca 1 ,S. V. A. Ayyadurai 2 , F. C. Dewey2; 1University of Catania/IT, 2 MIT/USA |
| BI-9.1.6 * |
10:50-11:30 |
Building in-silico Pathway SBML Models from Heterogeneous Sources |
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I. Kanaris 1 , K. Moutselos 1 , A. Chatziioannou 2 , I. Maglogiannis 1 , F. Kolisis 2; 1 University of Aegean/GR, 2 National Hellenic Research Foundation/GR |
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Friday, October 10, 11:30 – 13:00 |
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| Session BI-3.2 |
Olympia 1 |
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Functional Genomics, Proteomics |
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| Chairs |
D. Kafetzopoulos (FORTH/GR), E. Manolakos (University of Athens/GR) |
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| BI-3.2.1 |
11:30-11:45 |
A New Gene Expression Signature Related to Breast Cancer Estrogen Receptor Status |
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E. Christodoulou, M. Ioannou, G. Papagiannakis, E. Stathopoulos, D. Kafetzopoulos , M. Kafousi, T. Margaritis, et. al.; Foundation for Research and Technology Hellas/GR, University of Crete/GR ,Prolipsis Diagnostic Breast Center/GR |
| BI-3.2.2 |
11:45-12:00 |
A Novel Information Theoretic Method for Detecting Gene-Gene and Gene-Environment Interactions in Complex Diseases |
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P. Chanda , A. Zhang, M. Ramanathan; State University of New York at Buffalo/USA |
| BI-3.2.3 |
12:00-12:15 |
Gene – Nutrition Interactions in the Onset of Obesity as Cardiovascular Disease Risk Factor Based on a Computational Intelligence Method |
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I. K. Valavanis 1 , S. G. Mougiakakou 1 , S. Marinos 1 , G. Karkalis 1 , K. A. Grimaldi 2 , R. Gill 2 , K. S. Nikita1; 1National Technical University of Athens/GR, 2 Sciona, Inc./USA |
| BI-3.2.4 |
12:15-12:30 |
Floating Feature Selection for Multiloci Association of Quantitative Traits in Sib-pairs analysis |
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H. Brunel 1 , A. Perera 1 , A. Buil 2 , M. S. Lleal 2 , J. C. Souto 2 , J. Fontcuberta 2 , M. Vallverdu 1 , M. Soria 2 , P. Caminal 2 - 1 Universitat Politecnica de Catalunya/ES, 2 Hospital de la Santa Creu i Sant Pau/ES |
| BI-3.2.5 |
12:30-12:45 |
Charge State Determination of Peptide Tandem Mass Spectra Using Support Vector Machine (SVM) |
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A. M. Zou, J. R. Ding, J. H. Shi, F. X. Wu ; University of Saskatchewan/CA |
| BI-3.2.6 |
12:45-13:00 |
Systematic Elicitation of Sequence Patterns Associated with Non-proline cis Peptide Bonds |
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K. Exarchos , T. Exarchos, C. Papaloukas, A. Troganis, D. Fotiadis; University of Ioannina/GR |
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Friday, October 10, 11:30 – 13:00 |
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| Session BI-7.2 |
Templar's |
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CASIMIR-Database Interoperability & Ontologies |
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| Chairs |
V. Aidinis (B.S.R.C. Alexander Fleming/GR), P. N. Schofield (University of Cambridge/UK) |
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| BI-7.2.1 |
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CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources |
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J. M. Hancock 1 , P.N. Schofield 2 , C. Chandras 3 , M. Zouberakis 3 , V. Aidinis 3 , D. Smedley 2 , N. Rosenthal 4 , K. Schughart 5 , The CASIMIR Consortium; 1 MRC Harwell/UK, 2 University of Cambridge/UK, 3 B.S.R.C. Alexander Fleming/GR, 4 European Molecular Biology Laboratory/IT, 5 Helmholtz Centre for Infection Research/DE, |
| BI-7.2.2 |
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caBIG™: Opportunities and Challenges to Creating a Federated Global Network of Interoperable Information Systems |
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G. A. Komatsoulis; National Cancer Institute Center for Biomedical Informatics and Information Technology/USA |
| BI-7.2.3 |
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Database Interoperability through Web Services and Ontologies |
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T. Sellis 1 , D. Skoutas 1 , K. Staikos 2 - 1 National Technical University of Athens /GR, 2 European Dynamics SA/GR |
| BI-7.2.4 |
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Towards Dynamic Database Infrastructures for Mouse Genetics |
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M. A. Swertz 1 , D. Smedley 2 , K. Wolstencroft 3 , R. Alberts 4 , M. Zouberakis 5 , V. Aidinis 5 , K. Schughart 4 , P. Schofield 6 , R. C. Jansen 1 , The CASIMIR Consortium; 1 University of Groningen/NL, 2 European Bioinformatics Institute/UK, 3 University of Manchester/UK, 4 Helmholtz Center for Infection Research/DE, 5 B.S.R.C. Alexander Fleming/GR, 6 University of Cambridge/UK |
| BI-7.2.5 |
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The Mouse Resource Browser (MRB) – A Near-Complete Registry of Mouse Resources |
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M. Zouberakis 1 , C. Chandras 1 , J. M. Hancock 2 , P.N. Schofield 3 , V. Aidinis1; 1B.S.R.C. Alexander Fleming/GR, 2 MRC Harwell/UK, 3 University of Cambridge/UK |
| BI-7.2.6 |
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Using Bio-ontologies as Data Annotation, Integration & Analytical Tools at the Mouse Genome Informatics Resource |
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A. V. Anagnostopoulos , J. A. Blake, C. J. Bult, M. Ringwald, J. E. Richardson, J. A. Kadin, J. T. Eppig; The Jackson Laboratory/USA |
| BI-7.2.7 |
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One Medicine: Integrating Mouse and Human Disease Phenotypes |
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P. N. Schofield 1 , G. V. Gkoutos 1,2 , J. Sundberg 3 , J. M. Hancock 4 , The CASIMIR Consortium; 1 University of Cambridge/UK, 2 National Hellenic Research Foundation/GR, 3 The Jackson Laboratory/USA, 4 MRC Harwell/UK |
| BI-7.2.8 |
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Digital Preservation – Financial Sustainability of Biological Data and Material Resources |
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C. Chandras 1 , T. Weaver 2 , M. Zouberakis 1 , J. M. Hancock 3 , P. N. Schofield 4 , V. Aidinis1; 1B.S.R.C. Alexander Fleming/GR, 2 Geneservice Limited/UK, 3 MRC Harwell/UK, 4 University of Cambridge/UK |
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Friday, October 10, 11:30 – 13:00 |
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| Session BE-6.1 |
Abbey |
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Engineering Models in Bio-Medicine |
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| Chairs |
G. Rosen (Drexel University/USA), O. Milenkovic (University of Illinois/USA) |
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| BE-6.1.1 |
11:30-11:45 |
Local Haemodynamics and Intimal Hyperplasia at the Venous Side of Porcine Carotid Artery - Jugular Vein Shunt |
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T. Manos 1 , D. Sokolis 2 , A. Giagini 2 , J. Kakisis 3 , C. Davos 2 , P. E. Karayannacos 2 , N. Stergiopulos 4 , S. Tsangaris1; 1National Technical University of Athens/GR, 2 Foundation of Biomedical Research, Academy of Athens/GR, 3 University of Athens/GR, 4 Swiss Federal Institute of Technology/CH |
| BE-6.1.2 |
11:45-12:00 |
2D Occulomotor Plant Mathematical Model for Eye Movement Simulation |
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O. Komogortsev, U. Jayarathna ; Texas State University/USA |
| BE-6.1.3 |
12:00-12:15 |
MRI-Guided Robot-Assisted Lumpectomy for Surgical Management of Early Breast Cancer: Preliminary Investigation and Use Case Analysis |
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Y. Yu 1 , K. Yan 1 , T. Podder 1 , K. Brill 1 , L. Liao2,3; 1Thomas Jefferson University/USA, 2 Cooper Cancer Institute/ USA , 3 Robert Wood Johnson Univesity/USA |
| BE-6.1.4 |
12:15-12:30 |
A Generic Grid Interface and Execution Framework for Biomedical Applications |
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K. Vegoudakis, V. Koutkias , A. Malousi, I. Chouvarda, N. Maglaveras; Aristotle University of Thessaloniki/GR |
| BE-6.1.5 |
12:30-12:45 |
An Evaluation of Magnetically Induced Current Density in Human's Body, based on Measurements Conducted in a High Voltage Center of 150/20kV |
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A. Paraskevopoulos , P. Bourkas, C. Karagiannopoulos; National Technical University of Athens /GR |
| BE-6.1.6 |
12:45-13:00 |
Modelling glycaemia of diabetics: An Application |
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F. Benmakrouha 1 , C. Hespel 1 , M. l. V Foursov2; 1INSA -IRISA RENNES/FR, 2 IFSIC-IRISA RENNES/FR |
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Friday, October 10, 14:00 – 15:20 |
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| Plenary Session |
Olympia 2 |
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G. Alterovitz (MIT/USA) |
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| PL .9 |
14:00-14:40 |
An Effective Approach to Magnetoencephalography |
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T. Fokas; University of Cambridge/UK |
| PL. 10 |
14:40-15:20 |
Biobanks, Biomolecular Resources and Bioinformatics for Health Care and Medical Research in Europe |
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E. Bongcam-Rudloff; Linnaeus Center of Bioinformatics/SE |
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Friday, October 10, 15:20 – 16:35 |
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| Session BE-5.5 |
Olympia 1 |
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Biomedical Image Processing & Analysis |
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| Chairs |
D. Lymberopoulos.(University of Patras/GR), Y. Yu (Thomas Jefferson University/USA) |
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| BE-5.5.1 |
15:20-15:35 |
Preliminary Performance Evaluation of a High Resolution Small Animal PET Scanner with Monolithic Crystals and Depth-of-Interaction Encoding |
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M. Balcerzyk 1 , G. Kontaxakis 2 , M. Delgado 1 , L. Garcia 1 , G. M. Benlloch 3 , M. A. Poso 2 , 1 Univ. Complutense de Madrid/ES, 2 Univ. Politécnica de Madrid/ES, 3 Universidad de Valencia and CSIC/ES |
| BE-5.5.2 |
15:35-15:50 |
Assessment of Iterative Image Reconstruction Techniques for Small-Animal PET Imaging Applications |
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E. Karali, S. Pavlopoulos , D. Koutsouris; National Technical University of Athens /GR |
| BE-5.5.3 |
15:50-16:05 |
A Sparse Variational Bayesian Approach for fMRI Data Analysis |
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V. P. Oikonomou , E. E. Tripoliti, D. I. Fotiadis; University of Ioannina/GR |
| BE-5.5.4 |
16:05-16:20 |
In-vivo Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging and Fuzzy Connectedness |
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S. Sotiropoulos , C. Tench, L. Bai; University of Nottingham/UK |
| BE-5.5.5 |
16:20-16:35 |
Towards Quantification of Interstitial Pneumonia Patterns in Lung Multidetector CT |
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P. Korfiatis 1 , A. Karahaliou 1 , A. Kazantzi 2 , C. Kalogeropoulou 2 , L. Costaridou1; 1University of Patras/GR, 2 University Hospital of Patras/GR |
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Friday, October 10, 15:20 – 16:50 |
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| Session BI-4.2 |
Templar's |
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Gene Expression Analysis |
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| Chairs |
M. Zervakis (Technical University of Crete/GR ), S. Goodison (University of Florida/USA) |
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| BI-4.2.1 |
15:20-15:35 |
Performance Validation of Microarray Analysis Methods |
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M. Zervakis 1 , M. Blazadonakis 1 , A. Banti 1 , D. Kafetzopoulos 2 , V. Danilatou 2 , M. Tsiknakis2; 1Technical University of Crete/GR, 2 Foundation of Research and Technology Hellas/GR |
| BI-4.2.2 |
15:35-15:50 |
Differential Gene Expression Graphs: a Data Structure for Classification in DNA Microarrays |
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A. Benso , S. Di Carlo, G. Politano, L. Sterpone; Politecnico di Torino/IT |
| BI-4.2.3 |
15:50-16:05 |
A Computational Approach to Microarray Universal Reference Sample |
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G. Tsiliki , S. Kaforou , M. Kapsetaki, G. Potamias, D. Kafetzopoulos; Foundation of Research and Technology Hellas/GR |
| BI-4.2.4 |
16:05-16:20 |
Combining Singular Value Decomposition and t-test into Hybrid Approach for Significant Gene Extraction from Microarray Data |
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M. Alshalalfa , R. Alhajj, J. Rokne ; University of Calgary/CA |
| BI-4.2.5 |
16:20-16:35 |
Combining Nomogram and Microarray Data for Predicting Prostate Cancer Recurrence |
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Y. Sun , Y. Cai, S. Goodison ; University of Florida/USA |
| BI-4.2.6 |
16:35-16:50 |
Classification of Multiple Cancer Types in a Hyper Reproducing Kernel Hilbert Space |
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A. Blanco 1 , M. Martin-Merino 1 , J. De Las Rivas2; 1Universidad Pontificia de Salamanca/ES, 2 Cancer Research Center/ES |
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Friday, October 10, 15:20 – 16:35 |
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| Session BE-1.1 |
Abbey |
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Bioengineering Applications for People with Disabilities and the Elderly |
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| Chairs |
E. Papazoglou (Drexel University/USA), A. Prentza ( National Technical University of Athens /GR), |
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| BE-1.1.1 |
15:20-15:35 |
Assessment of Muscle Fatigue using a Probabilistic Framework for an EMG-based Robot Control Scenario |
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P. Artemiadis, K. Kyriakopoulos; National Technical University of Athens /GR |
| BE-1.1.2 |
15:35-15:50 |
Assessment of Diabetic Foot Ulcers with Diffuse Near Infrared Methodology |
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E. S. Papazoglou , M. S. Weingarten, L. Zubkov, M. Neidrauer, K. Pourrezaei; Drexel University/USA |
| BE-1.1.3 |
15:50-16:05 |
Transosseous Application of Low-Intensity Ultrasound at the Tendon-Bone Interface Affects the Healing Rate and Up-Regulates Simultaneously the Expression of Collagen Type I and tRNA Gly |
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L. Papatheodorou 1 , K. Grafanaki 1 , S. Giannouli 1 , D. Fotiadis 2 , C. Stathopoulos 1 , K. Malizos1; 1University of Thessaly/GR, 2 University of Ioannina/GR, |
| BE-1.1.4 |
16:05-16:20 |
A Proposal of a Fall Detection Algorithm for a MultiDevice Personal Intelligent Platform |
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M. A. Estudillo-Valderrama, L. M. Roa, J. Reina-Tosina, D. Naranjo-Hern á ndez; University of Seville/ES |
| BE-1.1.5 |
16:20-16:35 |
Glycaemic Stability of the Diabetic Patient and Therapeutic Adjustments |
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F. Benmakrouha 1, M. V. Foursov 2 , C. Hespel 1 , J. P. Hespel3; 1Institut National des Sciences Appliquées/FR, 2 University of Rennes-1/FR, 3 Centre Hospitalier Universitaire of Rennes/FR |
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